pileup_tumor_toy

datasets

Analyze data from next-generation sequencing experiments on genomic samples. 'CLONETv2' offers a set of functions to compute allele specific copy number and clonality from segmented data and SNPs position pileup. The package has also calculated the clonality of single nucleotide variants given read counts at mutated positions. The package has been developed at the laboratory of Computational and Functional Oncology, Department of CIBIO, University of Trento (Italy), under the supervision of prof Francesca Demichelis. References: Prandi et al. (2014) <doi:10.1186/s13059-014-0439-6>; Carreira et al. (2014) <doi:10.1126/scitranslmed.3009448>; Romanel et al. (2015) <doi:10.1126/scitranslmed.aac9511>.

Yari Ciani

CLONETv2

Clonality Estimates in Tumor

Davide Prandi

Alessandro Romanel

Tarcisio Fedrizzi

pileup_tumor_toy function

<p>An object of class <code>data.frame</code> with 816 rows and 11 columns.</p>

Format

Toy example of tumor pileup data. — pileup_tumor_toy

Toy example of tumor pileup data.

pileup_tumor_toy: Toy example of tumor pileup data.

Description

Usage

Arguments

Format