
This data is to provide an object to use in several examples without having to wait for computing it.
To see how it was generated, see documentation of function peakPloidy.


datasets

 object

Performs ratio, GC content correction and normalization of
data obtained using low coverage (one read every 100-10,000 bp)
high troughput sequencing. It performs a "discrete"
normalization looking for the ploidy of the genome. It will
also provide tumour content if at least two ploidy states can
be found.

Stefano Berri

CNAnorm

A normalization method for Copy Number Aberration in cancer
samples

CN function

Format

This data is to provide an object to use in several examples without having to wait for computing it.
To see how it was generated, see documentation of function peakPloidy.

CN: A CNAnorm object with information about most abundant ploidy states, obtained from data LS041.

Description

Usage

Arguments

Format