LS041


This data set provide reads in tumor and matched blood for patient LS041.
Each row has information about non-overlapping window across the genome. In particular
it reports: chromosome name, starting position of the window (1 based), 
number of mapped reads in the test (lung tumor), number of reads in the control (matched blood)
and GC content of the window.


datasets

 dataframe

Performs ratio, GC content correction and normalization of
data obtained using low coverage (one read every 100-10,000 bp)
high troughput sequencing. It performs a "discrete"
normalization looking for the ploidy of the genome. It will
also provide tumour content if at least two ploidy states can
be found.

Stefano Berri

CNAnorm

A normalization method for Copy Number Aberration in cancer
samples

LS041 function

Format

This data set provide reads in tumor and matched blood for patient LS041.
Each row has information about non-overlapping window across the genome. In particular
it reports: chromosome name, starting position of the window (1 based), 
number of mapped reads in the test (lung tumor), number of reads in the control (matched blood)
and GC content of the window.

LS041: Mapped reads in tumor and matched blood for patient LS041

Description

Usage

Arguments

Format

References