CNAnorm (version 1.18.0)

plotPeaks: Methods for Function plotPeaks in Package `CNAnorm'

Description

plotPeaks plot annotated distribution of ratio Test/Normal

Usage

"plotPeaks"(object, special1 = character(0), special2 = character(0), show ='suggested', ...)

Arguments

object

An object of Class "CNAnorm"

special1

The chromosome/contig whose distribution will be shown with a different color

special2

The chromosome/contig whose distribution will be shown with a different color

show

A character verctor with one or both of the following: "suggested", "validated". Specify what need to be plotted

...

Further arguments to pass to the function plot

See Also

plot, validation, peakPloidy

Examples

data(CN)
# see peakPloidy documentation to know how object CN is created
plotPeaks(CN, special1 = 'chrX', special2 = 'chrY')