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CNOGpro (version 1.1)
Copy Numbers of Genes in prokaryotes
Description
Methods for assigning copy number states and breakpoints in resequencing experiments of prokaryotic organisms.
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Version
Version
1.1
1.0
Install
install.packages('CNOGpro')
Monthly Downloads
12
Version
1.1
License
GPL-2
Maintainer
Ola Brynildsrud
Last Published
January 12th, 2015
Functions in CNOGpro (1.1)
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plotCNOGpro
Plots the results of a
CNOGpro
experiment
carsonella
CNV experiment of C. Carsonella ruddy (artificial data)
CNOGpro-package
CNOGpro - Copy Numbers of Genes in Prokaryotes
runBootstrap
Gene copy numbers with confidence intervals through bootstrapping
printCNOGpro
Prints the results of a
CNOGpro
experiment
store
Store the results of a
CNOGpro
copy number experiment
CNOGpro-internal
Internal CNOGpro Functions
summaryCNOGpro
Summarize the
CNOGpro
experiment
CNOGpro
Set up a new CNOGpro experiment
runHMM
Copy number variation inference through a Hidden Markov Model
normalizeGC
Normalization of read count data by GC content