CNOGpro (version 1.1)

plotCNOGpro: Plots the results of a CNOGpro experiment

Description

Plots the coverage in a number of ways: Coverage along the chromosome, density plots of coverage for each individual copy number state (as assigned by the runHMMmethod) and coverage by GC percentage of the reads, before and after normalization.

Usage

plotCNOGpro(experiment)

Arguments

experiment

An object of class CNOGpro

See Also

CNOGpro

Examples

data(carsonella)
carsonella_normalized <- normalizeGC(carsonella)
carsonella_hmm <- runHMM(carsonella_normalized, nstates=5)
plotCNOGpro(carsonella_hmm)