CNORfeeder (version 1.12.0)

UniprotIDdream: Uniprot identifiers for proteins in DreamModel

Description

This data object contains the Uniprot identifiers corresponding to DreamModel of CellNOptR package, in order to associat them with the corresponding nodes in the protein-protein interaction network (PPINigraph).

Usage

UniprotIDdream

Format

UniprotIDdream is a list where each element is a protien of the DreamModel and is associated with the respective Uniprot identifiers.

Source

This data object is manually derived from the Uniprot database.

References

1. F. Eduati, J. De Las Rivas, B. Di Camillo, G. Toffolo, J. Saez-Rodriguez. Integrating literature-constrained and data-driven inference of signalling networks. Bioinformatics, 28(18):2311-2317, 2012.
2. J. Saez-Rodriguez, L. G. Alexopoulos, J. Epperlein, R. Samaga, D. A. Lauffenburger, S. Klamt and P. K. Sorger. Discrete logic modeling as a means to link protein signaling networks with functional analysis of mammalian signal transduction, Molecular Systems Biology, 5:331, 2009.