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CNORfeeder (version 1.12.0)

Integration of CellNOptR to add missing links

Description

This package integrates literature-constrained and data-driven methods to infer signalling networks from perturbation experiments. It permits to extends a given network with links derived from the data via various inference methods and uses information on physical interactions of proteins to guide and validate the integration of links.

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Version

Version

1.12.0

License

GPL-3

Maintainer

FEduati

Last Published

February 15th, 2017

Functions in CNORfeeder (1.12.0)

mapBTables2model

Integrate Boolean tables with the model
linksRanking

Ranking of links inferred from data
gaBinaryT1W

Genetic algorithm used to optimise a model differently weighting links
MIinference

Mutual information based network inference
weighting

Weight integrated links.
makeBTables

Make Boolean tables
mapDDN2model

Integrate data-drive network with the model
UniprotIDdream

Uniprot identifiers for proteins in DreamModel
PPINigraph

Protein-protein interaction netwrok
CNORfeeder-package

R package to integrate literature-constrained and data-driven methods to infer signalling networks from perturbation experiments
Binference

Bayesian network inference