CNVrd2 (version 1.10.2)

plotPolymorphicRegion: Plot polymorphic regions.

Description

Plot polymorphic regions based on coordinates set by users.

Usage

plotPolymorphicRegion(Object, ...)

Arguments

Object

An object of class CNVrd2

...

polymorphicRegionObjectAn object obtained from the process of identifying poplymorphic regions.

Optional arguments.

Value

putativeBoundary

Putative boundaries of polymorphic regions based on quantile values.

See Also

identifyPolymorphicRegion

Examples

## Not run: 
# 
# plotPolymorphicRegion(Object = objectCNVrd2, polymorphicRegionObject = fcgr3PolymorphicRegion,
#                       xlim = c(161300000, 161800000), drawThresholds = TRUE,
#                       thresholdForPolymorphicRegions = c(0.75, 0.25))
# 
# 
# 
# ##Change thresholds
# plotPolymorphicRegion(Object = objectCNVrd2, polymorphicRegionObject = fcgr3PolymorphicRegion,
#                       xlim = c(161300000, 161800000), drawThresholds = TRUE,
#                       thresholdForPolymorphicRegions = c(0.9, 0.1))
# 
# 
# ##Plot standard deviation
# 
# plotPolymorphicRegion(Object = objectCNVrd2, polymorphicRegionObject = fcgr3PolymorphicRegion,
#                       xlim = c(161300000, 161800000), typePlot = "SD",
#                       thresholdForPolymorphicRegions = c(0.75, 0.25))
# 
# 
# 
# 
# 
# ## End(Not run)