CRImage (version 1.20.0)

CRImage a package to classify cells and calculate tumour cellularity

Description

CRImage provides functionality to process and analyze images, in particular to classify cells in biological images. Furthermore, in the context of tumor images, it provides functionality to calculate tumour cellularity.

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Version

1.20.0

License

Artistic-2.0

Maintainer

Henrik Failmezger

Last Published

February 15th, 2017

Functions in CRImage (1.20.0)

convertHSVToRGB

Conversion from HSV color space to RGB color space

convertRGBToHSV

Conversion from RGB color space to HSV color space

plotCorrectedCN

Plot CN profiles corrected for cellularity

SauvolaThreshold

Do Sauvola thresholding

convertRGBToLAB

Converts RGB to LAB color space.

convertLABToRGB

Conversion of LAB colour space to RGB colour space

segmentImage

Segmentation of an image

calculateOtsu

Does Otsu thresholding

calculateCellularity

Calculation of tumour cellularity

createClassifier

Construction of a classifier

CRImage-package

CRImage is a package to analyze images and classify cells.

classifyCells

A function to classify cells

labelCells

Interactive Session for cell labeling

createBinaryImage

Thresholding

colorCorrection

Color transfer between images.

calculateMeanStdTarget

Calculates Mean and Standard deviation of an image

processAperio

Cellularity Calculation of Aperio TX Scanner

correctCopyNumber

Allelic Copy Number correction for cellularity

CRImage-internal

Internal CRImage Functions