CRImage-package

CRImage


CRImage allows classification of cells in biological images. It offers methods to segment cells or cell nuclei
in biological images for example HE stained images. It offers methods to create a classifier and to classify cells in these images.
Furthermore it allows the calculation of tumour cellularity for large microscope images.<p></p><p>CRImage makes use of the image processing package EBImage, which uses the 'ImageMagick' library for image I/O operations and the 'GTK' library to display images.
</p>

misc

CRImage provides functionality to process and analyze images, in particular to classify cells in biological images. Furthermore, in the context of tumor images, it provides functionality to calculate tumour cellularity.

Henrik Failmezger

CRImage a package to classify cells and calculate tumour
cellularity

CRImage-package function

 Image processing methods:
<ul>
<li>calculateThreshold
</li>
<li>segmentImage
</li>
</ul> Classification:
<ul>
<li>createTrainingSet
</li>
<li>createClassifier
</li>
<li>classifyCells
</li>
</ul> Tumour cellularity
<ul>
<li>calculateCellularity
</li>
<li>processAperio
</li>
</ul> 

Package content

Image processing methods:
<ul><li>calculateThreshold</li></ul>
<item>segmentImage</item>

CRImage allows classification of cells in biological images. It offers methods to segment cells or cell nuclei
in biological images for example HE stained images. It offers methods to create a classifier and to classify cells in these images.
Furthermore it allows the calculation of tumour cellularity for large microscope images.

CRImage makes use of the image processing package EBImage, which uses the 'ImageMagick' library for image I/O operations and the 'GTK' library to display images.

CRImage-package: CRImage is a package to analyze images and classify cells.

Description

Arguments

Package content

Details

Examples