sampleSEP3_test

TAIR8_genes_test

controlSEP3_test


  Partial dataset of a Solexa DNA library obtained from a ChIP-seq experiment in Arabidopsis


datasets

Statistical tools for ChIP-seq data analysis. The package
includes the statistical method described in Kaufmann et al.
(2009) PLoS Biology: 7(4):e1000090. Briefly, Taking the average
DNA fragment size subjected to sequencing into account, the
software calculates genomic single-nucleotide read-enrichment
values. After normalization, sample and control are compared
using a test based on the Poisson distribution. Test statistic
thresholds to control the false discovery rate are obtained
through random permutation.

Jose M Muino

CSAR

Statistical tools for the analysis of ChIP-seq data

sampleSEP3_test function

Kaufmann et al. (2009) Target Genes of the MADS Transcription Factor SEPALLATA3: Integration of Developmental and Hormonal Pathways in the $Arabidopsis$ Flower. PLoS Biol 7:e1000090

Source

Partial dataset of a Solexa DNA library obtained from a ChIP-seq experiment in Arabidopsis

sampleSEP3_test: Partial dataset of a ChIP-seq experiment

Description

Arguments

Source

Examples