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CSclone (version 1.0)

Bayesian Nonparametric Modeling in R

Description

Germline and somatic locus data which contain the total read depth and B allele read depth using Bayesian model (Dirichlet Process) to cluster. Meanwhile, the cluster model can deal with the SNVs mutation and the CNAs mutation.

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Version

Install

install.packages('CSclone')

Monthly Downloads

157

Version

1.0

License

GPL (>= 2)

Maintainer

Peter Wu

Last Published

November 12th, 2016

Functions in CSclone (1.0)

adjust.mpear

Adjust MPEAR
Hamming

Hamming distance
CSclone

Clustering model which contains the CNAs mutation and SNVs mutation.
simu.data

Simulate data
l.s

Linear relation for SNVs
tf_similar

True or false of similar