CausalR (version 1.4.3)

CreateCCG: create a Computational Causal Graph (CCG)

Description

Creates a computational causal graph from a network file.

Usage

CreateCCG(filename)

Arguments

filename

file name of the network file (in .sif file format)

Value

an igraph object containing the CCG.

References

L Chindelevitch et al. Causal reasoning on biological networks: Interpreting transcriptional changes. Bioinformatics, 28(8):1114-21, 2012.

Examples

# get path to example .sif file
network <- system.file(package='CausalR', 'extdata', 'testNetwork.sif')
#create ccg
ccg = CreateCCG(network)