CausalR (version 1.4.3)

runRankHypothesis: run rank the hypothesis

Description

A top level function that used to run CausalR

Usage

runRankHypothesis(PPInet, Expressiondata, delta, correctPredictionsThreshold)

Arguments

PPInet

PPInet is the PPI interaction file

Expressiondata

observed gene expression data

delta

the number of links to follow from any hypothesis no. Dedepending on network size/topology, this value typically ranges between 1 and 5

correctPredictionsThreshold

Minimal score for p-values calculation. Hypotheses with scores below this value will get NAs for p-value and enrichment p-value. The usual default is -inf within the RankTheHypotheses function, where it is employed.

Value

rankedHypothesis table of results produced by the algorithm