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CeRNASeek (version 1.0)

Identification and Analysis of ceRNA Regulation

Description

Provides several functions to identify and analyse miRNA sponge, including popular methods for identifying miRNA sponge interactions, two types of global ceRNA regulation prediction methods and three types of context-specific prediction methods( Li Y et al.(2017) ), which are based on miRNA-messenger RNA regulation alone, or by integrating heterogeneous data, respectively. In addition, this package provides several network analysis modules for viewing the constructed ceRNA-ceRNA network and analysis of the topological features.

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Version

Install

install.packages('CeRNASeek')

Monthly Downloads

246

Version

1.0

License

GPL-3

Maintainer

Mengying Zhang

Last Published

April 4th, 2019

Functions in CeRNASeek (1.0)

dataset

Data for Examples
CeRNASeek-package

CeRNASeek
ceRNA.app

identify the miRNAs that co-regulate the gene pairs of interest.
ceRNA.Net

visualize and analyze the identified ceRNA-ceRNA network using ceRNA.Net function
ceRNA.basic

Identifying miRNA sponge interactions using ceRNA.basic function
ceRNA.Lin

identifying miRNA sponge interactions using ceRNA.Lin function
ceRNA.cmi

identifying miRNA sponge interactions using ceRNA.cmi function.