CeRNASeek (version 1.0)

dataset: Data for Examples

Description

This object contains data for examples.

Usage

data(dataset)

Format

A list with 4 variables:

miRtar

MiRNA<U+2013>target regulation,assembled genome-wide miRNA-gene regulation by TargetScan,It includes 44 rows standing for miRNA-gene regulation pairs in glioblastoma and 2 columns (the first is dataframe header).

geneexp

a dataframe representing target regulations expression ,all of which are gene expression value,in glioblastoma.It includes 6 rows standing for 6 gene targets and 541 columns standing for 541 samples.Its rownames are gene symbols.

miRexp

a dataframe representing miRNA expression profile in glioblastoma.It includes 57 rows standing for 57 miRNA and 541 columns standing for 541 samples.Its rownames are miRNA symbols.

Pre.ceRNA

a data frame representing the ceRNA identified in the pre-experiment using the method provided by the software to draw a network map.

Details

All epression data is from a study about glioblastoma.The miRNA-gene regulation information is from TargetScan.

References

Network, Atlas T C G . Corrigendum: Comprehensive genomic characterization defines human glioblastoma genes and core pathways[J]. Nature, 2013, 494(7438):506-506.

Examples

# NOT RUN {
data(dataset)
## maybe str(dataset) ; ...
# }