ChIPpeakAnno (version 3.6.5)

TSS.zebrafish.Zv9: TSS annotation for Danio rerio (Zv9) obtained from biomaRt

Description

TSS annotation for Danio rerio (Zv9) obtained from biomaRt

Usage

data(TSS.zebrafish.Zv9)

Arguments

Format

GRanges with slot start holding the start position of the gene, slot end holding the end position of the gene, slot names holding ensembl gene id, slot seqnames holding the chromosome location where the gene is located and slot strand holding the strinad information. In addition, the following variables are included.
description
description of the gene

Details

Annotation data obtained by:

mart <- useMart(biomart="ENSEMBL_MART_ENSEMBL", host="mar2015.archive.ensembl.org", path="/biomart/martservice", dataset="drerio_gene_ensembl") getAnnotation(mart, featureType = "TSS")

Examples

Run this code
data(TSS.zebrafish.Zv9)
slotNames(TSS.zebrafish.Zv9)

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