bdp

0th

Percentile

obtain the peaks near bi-directional promoters

Obtain the peaks near bi-directional promoters. Also output percent of peaks near bi-directional promoters.

Keywords
misc
Usage
bdp (peaks, annoData, maxgap=2000L, ...)
Arguments
peaks
peak list, GRanges object
annoData
annotation data, annoGR object
maxgap
maxgap between peak and TSS
...
Not used.
Value

Output is a list of GRanges object of the peaks near bi-directional promoters.

See Also

See Also as annoPeaks, annoGR

Aliases
  • bdp
Examples
  if(interactive()){
    library(EnsDb.Hsapiens.v75)
    data("myPeakList")
    annoGR <- annoGR(EnsDb.Hsapiens.v75)
    seqlevelsStyle(myPeakList) <- seqlevelsStyle(annoGR)
    bdp(myPeakList, annoGR)
  }
Documentation reproduced from package ChIPpeakAnno, version 3.6.5, License: GPL (>= 2)

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