translatePattern

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Percentile

translate pattern from IUPAC Extended Genetic Alphabet to regular expression

translate pattern containing the IUPAC nucleotide ambiguity codes to regular expression. For example,Y->[C|T], R-> [A|G], S-> [G|C], W-> [A|T], K-> [T|U|G], M-> [A|C], B-> [C|G|T], D-> [A|G|T], H-> [A|C|T], V-> [A|C|G] and N-> [A|C|T|G].

Keywords
misc
Usage
translatePattern(pattern)
Arguments
pattern
a character vector with the IUPAC nucleotide ambiguity codes
Value

a character vector with the pattern represented as regular expression

See Also

countPatternInSeqs, summarizePatternInPeaks

Aliases
  • translatePattern
Examples
    pattern1 = "AACCNWMK"
    translatePattern(pattern1)
Documentation reproduced from package ChIPpeakAnno, version 3.6.5, License: GPL (>= 2)

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