xget


    see <a rd-options="AnnotationDbi" href="/link/mget?package=ChIPpeakAnno&version=3.6.5&to=AnnotationDbi" data-mini-rdoc="AnnotationDbi::mget">mget</a>
  

x, envir, mode, ifnotfound, inherits

return the all or first item for each query

output

 misc 

The package includes functions to retrieve the sequences
around the peak, obtain enriched Gene Ontology (GO) terms, find
the nearest gene, exon, miRNA or custom features such as most
conserved elements and other transcription factor binding sites
supplied by users. Starting 2.0.5, new functions have been
added for finding the peaks with bi-directional promoters with
summary statistics (peaksNearBDP), for summarizing the
occurrence of motifs in peaks (summarizePatternInPeaks) and for
adding other IDs to annotated peaks or enrichedGO (addGeneIDs).
This package leverages the biomaRt, IRanges, Biostrings,
BSgenome, GO.db, multtest and stat packages.

Lihua Julie Zhu

ChIPpeakAnno

Batch annotation of the peaks identified from either ChIP-seq,
ChIP-chip experiments or any experiments resulted in large
number of chromosome ranges

xget function


    see <a rd-options='AnnotationDbi' href='mget'>mget</a>
  

xget: Return the value from a Bimap objects

Description

Usage

Arguments

Value

See Also

Examples