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Cleanet (version 1.0.0)

Automated Doublet Detection and Classification for Cytometry Data

Description

Automated method for doublet detection in flow or mass cytometry data, based on simulating doublets and finding events whose protein expression patterns are similar to the simulated doublets.

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Version

Install

install.packages('Cleanet')

Monthly Downloads

177

Version

1.0.0

License

GPL-3

Maintainer

Matei Ionita

Last Published

December 19th, 2024

Functions in Cleanet (1.0.0)

filter_debris_cytof

Flag debris in mass cytometry data.
compare_doublets_exp_obs

Tabulate expected and observed proportions of doublet types.
filter_debris_flow

Flag debris in flow cytometry data.
classify_doublets

Classify doublets (or multiplets) based on component singlets.
cleanet

Detect doublets in a single cytometry sample