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CoSeg (version 0.38)

Cosegregation Analysis and Pedigree Simulation

Description

Tools for generating and analyzing pedigrees. Specifically, this has functions that will generate realistic pedigrees for the USA and China based on historical birth rates and family sizes. It also has functions for analyzing these pedigrees when they include disease information including one based on counting meioses and another based on likelihood ratios.

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Version

Install

install.packages('CoSeg')

Monthly Downloads

6

Version

0.38

License

GPL (>= 2)

Maintainer

John Michael O Ranola

Last Published

February 11th, 2017

Functions in CoSeg (0.38)

MakeAffectedTrees

Make affected trees
FormatWebToCoSeg

Plots a tree/pedigree
CoSeg-package

\Sexpr[results=rd,stage=build]{tools:::Rd_package_title("#1")}CoSegCosegregation Analysis and Pedigree Simulation
AddAffectedToTrees

Add affection status to a given tree
BRCA1Frequencies.df

BRCA1 cancer incidence data frame
CalculateLikelihoodRatio

A function to calculate the likelihood ratio
BRCA2Frequencies.df

BRCA2 cancer incidence data frame
ChinaDemographics.df

Chinese Demographics Data Frame
MakeTree

Make a tree
AddAffectedToTree

Add affection status to a given tree
RankMembers

A function to calculate the likelihood ratio
PlotPedigree

Plots a tree/pedigree
USDemographics.df

United States Demographics Data Frame
MakeTrees

Make a tree
MLH1Frequencies.df

Lynch Syndrome cancer incidence data frame