CorMut-package

CorMut


CorMut provides functions for computing kaks for individual site or specific amino and detecting correlated mutation among them. Three methods are provided for detecting correlated mutation,including conditional selection pressure, mutual information and Jaccard index. the computation consists of two steps: First,the positive selection sites are detected; Second,the mutation correlation are computed among the positive selection sites. Note that the first step is optional. Meanwhile, CorMut facilitates the comparison of the correlated mutations between two conditions by the means of correlated mutation network.


CorMut provides functions for computing kaks for
individual sites or specific amino acids and detecting
correlated mutations among them. Three methods are provided for
detecting correlated mutations ,including conditional selection
pressure, mutual information and Jaccard index. The computation
consists of two steps: First, the positive selection sites are
detected; Second, the mutation correlations are computed among
the positive selection sites. Note that the first step is
optional. Meanwhile, CorMut facilitates the comparison of the
correlated mutations between two conditions by the means of
correlated mutation network.

Zhenpeng Li

Detect the correlated mutations based on selection pressure

CorMut-package function

CorMut provides functions for computing kaks for individual site or specific amino and detecting correlated mutation among them. Three methods are provided for detecting correlated mutation,including conditional selection pressure, mutual information and Jaccard index. the computation consists of two steps: First,the positive selection sites are detected; Second,the mutation correlation are computed among the positive selection sites. Note that the first step is optional. Meanwhile, CorMut facilitates the comparison of the correlated mutations between two conditions by the means of correlated mutation network.

CorMut-package: Detect the correlated mutations based on selection pressure

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