Learn R Programming
⚠️There's a newer version (1.1) of this package.Take me there.

CpGFilter (version 1.0)

CpG Filtering Method Based on Intra-class Correlation Coefficients

Description

Filter CpGs based on Intra-class Correlation Coefficients (ICCs) when replicates are available. ICCs are calculated by fitting linear mixed effects models to all samples including the un-replicated samples. Including the large number of un-replicated samples improves ICC estimates dramatically. The method accommodates any replicate design.

Copy Link

Version

Install

install.packages('CpGFilter')

Monthly Downloads

142

Version

1.0

License

GPL-2

Maintainer

Jun Chen

Last Published

November 6th, 2014

Functions in CpGFilter (1.0)

CpGFilter-package

CpG filtering method based on linear mixed effects model.
CpGFilterICC

CpG filtering method based on intra-class correlation coefficients.
B2M

Convert CpG Beta value to M value