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DAISIE (version 1.0.2)

islands_2types_1000reps: 1000 islands in DAISIE format simulated with the ML parameters of the CR_lamc_mu_K model for the Galapagos data (2 types of species)

Description

Each simulated dataset is an element of the list, which can be called using e.g. islands_2types_1000reps[[1]] Each of the island replicates is a list in itself. The first (e.g. islands_2types_1000reps[[x]][[1]]) element of that list has the following components: $island_age - the island age $not_present_type1 - the number of mainland lineages of type 1 that are not present on the island $not_present_type2 - the number of mainland lineages of type 2 that are not present on the island $stt_all - STT table for all species on the island (nI - number of non-endemic species; nA - number of anagenetic species, nC - number of cladogenetic species, present - number of independent colonisations present ) $stt_stt_type1 - STT table for type 1 species on the island (nI - number of non-endemic species; nA - number of anagenetic species, nC - number of cladogenetic species, present - number of independent colonisations present ) $stt_stt_type2 - STT table for type 2 species on the island (nI - number of non-endemic species; nA - number of anagenetic species, nC - number of cladogenetic species, present - number of independent colonisations present )

The subsequent elements of the list each contain information on a single colonist lineage on the island and has 4 components: $branching_times - island age and stem age of the population/species in the case of Non-endemic, Non-endemic_MaxAge and Endemic anagenetic species. For cladogenetic species these should be island age and branching times of the radiation including the stem age of the radiation. $stac - the status of the colonist * Non_endemic_MaxAge: 1 * Endemic: 2 * Endemic&Non_Endemic: 3 * Non_endemic: 4 $missing_species - number of island species that were not sampled for particular clade (only applicable for endemic clades) $type_1or2 - whether the colonist belongs to type 1 or type 2

Usage

data(islands_2types_1000reps)

Arguments

Format

A list with 1000 items.

Source

Valente, L.M., A.B. Phillimore and R.S. Etienne (2015). Equilibrium and non-equilibrium dynamics simultaneously operate in the Galapagos islands. Ecology Letters 18: 844-852.

See Also

DAISIE_sim, DAISIE_plot_sims