DEFormats (version 1.0.2)

as.DESeqDataSet: Convert to DESeqDataSet

Description

Coerces an object to DESeqDataSet.

Usage

as.DESeqDataSet(x, ...)
"as.DESeqDataSet"(x, ...)

Arguments

x

an R object

...

additional arguments to be passed to methods

Value

A DESeqDataSet object

Methods (by class)

• DGEList: Coerce DGEList-class objects to DESeqDataSet.

See Also

as.DGEList

Examples

require("edgeR")

counts = simulateRnaSeqData()
group = rep(c("case", "control"), each = 3)

dge = DGEList(counts = counts, group = group)
dge

as.DESeqDataSet(dge)