DEFormats (version 1.0.2)

simulateRnaSeqData: Example counts table of RNA-seq data

Description

Simulated expression data of an RNA-seq experiment.

Usage

simulateRnaSeqData(output = c("matrix", "RangedSummarizedExperiment"), n = 1000, m = 6, seed = 0L, ...)

Arguments

output

output type

n

number of genes

m

number of samples

seed

a single integer value specifying the random number generator seed

...

arguments passed to makeExampleDESeqDataSet

Value

Depending on the output setting a matrix or an RangedSummarizedExperiment object.

Details

The count table is generated using the makeExampleDESeqDataSet method from the DESeq2 package.

See Also

simulateNormFactors

Examples

## count data matrix
mx = simulateRnaSeqData()
head(mx)

## return an RangedSummarizedExperiment object
se = simulateRnaSeqData(output = "RangedSummarizedExperiment")
se