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Version

Version

1.8.2

License

GPL (>=2)

Maintainer

Lorena Pantano

Last Published

February 15th, 2017

Functions in DEGreport (1.8.2)

degPR

plot the correlation between the rank according estimator and the rank according FC
degMV

Correlation of the standard desviation and the mean of the abundance of a set of genes.
createReport

Create report of RNAseq DEG anlaysis
degBI

Get the estimates of the fold change (FC) mean from a FC distribution using bayesian inference
humanSexDEedgeR

edgeR object for DE genes betwen Male and Females
degMean

Distribution of pvalues by expression range
degBIcmd

Apply bayesian inference to estimate the average fold change (FC) of a distribution
geneInfo

data.frame with chromose information for each gene
figurepvaluebyvar

Wrap figure from degVar into a Nozzle object
degMB

Distribution of expression of DE genes compared to the background
DEGreportSet

list object for DE genes betwen Male and Females
degFC

get the FC for each gene between two groups
degVar

Distribution of pvalues by standard desviation range
figurebyexp

Wrap figure from degMB into a Nozzle object
degObj

Create a deg object that can be used to plot expression values at shiny server:runGist(9930881)
figurepvaluebyexp

Wrap figure from degMean into a Nozzle object
figurepvaluebyvarexp

Wrap figure from degMV into a Nozzle object
degRank

Get rank data frame with best score on the top
degVB

Distribution of the standard desviation of DE genes compared to the background
degComb

Get random combinations of two groups
degNcomb

Get number of potential combinations of two vectors
tablerank

Create table for Nozzle report
figurerank

Wrap figure from plotrank into a Nozzle object
figurebyvar

Wrap figure from degVB into a Nozzle object