Example.untransformed


The data set gives the fragment lengths (in base pairs) for three loci and three populations.


datasets

This package allows to calculate the fixation index Gst
(Nei, 1973) and the differentiation index D (Jost, 2008) pairwise
between or averaged over several populations.  P-values, stating the
significance of differentiation, and 95 percent confidence intervals
can be estimated using bootstrap resamplings. In the case that more
than two populations are compared pairwise, the p-values are
adjusted by bonferroni correction and in several other ways due to
the multiple comparison from one data set.

Alexander Jueterbock

DEMEtics

Evaluating the genetic differentiation between populations based
on Gst and D values.

Example.untransformed function

A data frame with 216 observations on the following 8 variables.
  <dl>
    <dt><code>individual</code></dt><dd>a factor with each individual representing one level</dd> <dt><code>population</code></dt><dd>a factor with levels <code>population1</code>,
      <code>population2</code>, <code>population3</code></dd> <dt><code>locus1.allele1</code></dt><dd>a numeric vector listing the base pairs of the first allele of locus1</dd> <dt><code>locus1.allele2</code></dt><dd>a numeric vector listing the base pairs of the second allele of locus1</dd> <dt><code>locus2.allele1</code></dt><dd>a numeric vector listing the base pairs of the first allele of locus2</dd> <dt><code>locus2.allele2</code></dt><dd>a numeric vector listing the base pairs of the second  allele of locus2</dd> <dt><code>locus3.allele1</code></dt><dd>a numeric vector listing the base pairs of the first allele of locus3</dd> <dt><code>locus3.allele2</code></dt><dd>a numeric vector listing the base pairs of the second  allele of locus3</dd> </dl>

Example.untransformed: Allelic Data of Three Populations for Three Loci

Description

Usage

Arguments

Format

Examples