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DNAmixturesLite (version 0.0-1)

Statistical Inference for Mixed Traces of DNA (Lite-Version)

Description

Statistical methods for DNA mixture analysis. This package is a lite-version of the 'DNAmixtures' package to allow users without a 'HUGIN' software license to experiment with the statistical methodology. While the lite-version aims to provide the full functionality it is noticeably less efficient than the original 'DNAmixtures' package. For details on implementation and methodology see .

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Version

Install

install.packages('DNAmixturesLite')

Monthly Downloads

244

Version

0.0-1

License

GPL (>= 2)

Maintainer

Therese Graversen

Last Published

March 16th, 2023

Functions in DNAmixturesLite (0.0-1)

mixML

Maximisation of the likelihood for one or more mixed traces of DNA
setCPT.D

Set tables for auxiliary variables D
predict.DNAmixture

Various probabilities in a fitted DNA mixture model
setCPT

Set conditional probability tables for all auxiliary variables
setCPT.Q

Set tables for auxiliary variables Q
setCPT.O

Set tables for auxiliary variables O.
summary.map.genotypes

Summary of best genotypes
prequential.score

Calculate prequential scores
setPeakInfo

Include or exclude peak information in the model
rPeakHeight

Simulate peak heights from a DNA mixture model.
qqpeak

Quantile-Quantile plot for assessing the distribution of observed peak heights.
varEst

Estimated asymptotic variance matrix for MLE
NGM

NGM allele frequencies
SGMplusDyes

Dyes used for SGMplus
NGMDyes

Dyes used for NGM
UKCaucasian

Allele frequencies for UK Caucasians
DNAmixture

Create a DNA mixture model
MC15

The MC15 DNA mixture
DNAmixtureData

Create a data set for a DNA mixture model
ProfilerDyes

Dyes used for Profiler plus
MC18

The MC18 DNA mixture
DNAmixturesLite-package

Statistical Inference for Mixed Samples of DNA (Lite-Version)
map.genotypes

Maximum posterior genotypes of unknown contributors
boxplot.DNAmixture

Plot simulated peak heights for multiple DNA mixtures.
buildMixtureDomains

Create RHugin domains for computation.
USCaucasian

The data base of allele frequencies for 302 US Caucasian profiles.
dyes

Dyes for a DNA mixture
mixpar

Parameters for DNA mixture models
plot.DNAmixture

Plot a DNA mixture model
getShapes

Shape parameters for a mixture with known contributors only
logL

Loglikelihood function for DNA mixture analysis.