DescTools v0.99.14

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by Andri Signorell

Tools for Descriptive Statistics

A collection of basic statistic functions and convenience wrappers for efficiently describing data. The author's intention was to create a toolbox, which facilitates the (notoriously time consuming) first descriptive tasks in data analysis, consisting of calculating descriptive statistics, drawing graphical summaries and reporting the results. The package contains furthermore functions to produce documents using MS Word (or PowerPoint) and functions to import data from Excel. Many of the included functions can be found scattered in other packages and other sources written partly by Titans of R. The reason for collecting them here, was primarily to have them consolidated in ONE instead of dozens of packages (which themselves might depend on other packages which are not needed at all), and to provide a common and consistent interface as far as function and arguments naming, NA handling, recycling rules etc. are concerned. Google style guides were used as naming rules (in absence of convincing alternatives). The 'camel style' was consequently applied to functions borrowed from contributed R packages as well.

Functions in DescTools

Name Description
Desc.formula Describe Variables by Groups
SetAlpha Add an Alpha Channel To a Color
AndersonDarlingTest Anderson-Darling Test of Goodness-of-Fit
Desc.integer Describe an integer variable
ConnLines Add Connection Lines to a Barplot
BoxCox Box Cox Transformation
DoCall Fast Alternative To The Internal do.call
Clockwise Calculates Begin and End Angle From a List of Given Angles in Clockwise Mode
Abind Combine multi-dimensional arrays
LogLin Log Linear Hybrid, Generalized Log
Contrasts Pairwise Contrasts
Gmean Geometric Mean and Standard Deviation
AxisBreak Place a Break Mark on an Axis
Desc.factor Describe a Factor, an Ordered Factor Or a Character Vector
Fibonacci Fibonacci Numbers
GetCurrWrd Get a Handle to a Running Word Instance
CramerVonMisesTest Cramer-von Mises test for normality
DrawRegPolygon Draw Regular Polygon(s)
Eps Greenhouse-Geisser And Huynh-Feldt Epsilons
AddMonths Add a Month to a Date
ColorLegend Add a ColorLegend to a Plot
AscToChar Convert ASCII Codes to Characters and Vice Versa
Format Format Numbers and Dates
DivCoefMax Maximal value of Rao's diversity coefficient also called quadratic entropy
Between, Outside Operators To Check, If a Value Lies Within Or Outside a Given Range
Agree Raw Simple And Extended Percentage Agreement
EtaSq Effect size calculations for ANOVAs
DescTools-package Tools for Descriptive Statistics and Exploratory Data Analysis
ColToHsv R Color to HSV Conversion
DrawArc Draw Elliptic or Circular Arc(s)
BinomCI Confidence Intervals for Binomial Proportions
ExpFreq Expected frequencies
NemenyiTest Nemenyi Test
Assocs Association Measures
CCC Concordance Correlation Coefficient
Frac Fractional Part and Maximal Digits of a Numeric Value
Atkinson Calculate the Atkinson Index
CatTable Function to write a table
PlotVenn Plot a Venn Diagram
IsPrime IsPrime Property
Desc.Date Describe a Date Vector
PlotCorr Plot a Correlation Matrix
Canvas Canvas for Geometric Plotting
CartToPol Transform Cartesian to Polar/Spherical Coordinates and vice versa
BubbleLegend Add a Legend to a Bubble Plot
Association measures Cramer's V, Pearson's Contingency Coefficient and Phi Coefficient Yule's Q and Y, Tschuprow's T
DrawAnnulus Draw One or Several Annuli
Entropy Shannon Entropy and Mutual Information
ClipToVect Reformat a Table in the Clipboard as Vector
LehmacherTest Lehmacher's Test for Marginal Homogenity
reorder.factor Reorder the Levels of a Factor
DrawEllipse Draw an Ellipse
MHChisqTest Mantel-Haenszel Chi-Square Test
Desc.data.frame Describe a data.frame Or a List
RelRisk Relative Risk
Desc.numeric Describe a numeric vector
ICC Intraclass Correlations (ICC1, ICC2, ICC3 From Shrout and Fleiss)
BreslowDayTest Breslow-Day Test for Homogeneity of the Odds Ratios
ColToRgb Color to RGB Conversion
SplitPath Split Path In Drive, Path, Filename
CollapseTable Collapse Levels of a Table
Exec Execute a Command Given As String
GetNewPP Create a new PowerPoint Instance
IsEuclid Is a Distance Matrix Euclidean?
ParseFormula Parse a Formula and Create a Model Frame
IdentifyA Identify Points in Plot Lying within a Rectangle or Polygon
Closest Find the Closest Value
AllDuplicated Index Vector of All Values Involved in Ties
ConDisPairs Concordant and Discordant Pairs
Coalesce Return the First Element Not Being NA
PDFManual Get PDF Manual Of a Package From CRAN
SampleTwins Sample Twins
DrawCircle Draw a Circle
PlotPyramid Draw a Back To Back Pyramid Plot
Date Create a Date from Numeric Representation
BoxCoxLambda Automatic Selection of Box Cox Transformation Parameter
Mode Mode
BinToDec Converts numbers from binmode, octmode or hexmode to decimal and vice versa
CohenKappa Cohen's Kappa and Weighted Kappa
CorPolychor Polychoric Correlation
RgbToCol Find the Named R-Color Which Is Nearest to a Given RGB-Color
Stamp Date/Time/Directory Stamp the Current Plot
BoxedText Add Text in a Box to a Plot
%overlaps% Determines If And How Extensively Two Date Ranges Overlap
PlotMatrix Scatterplot Matrix
PlotACF Combined Plot of a Time Series and its ACF and PACF
DenseRank Dense Ranks
Benford Benford's Distribution
BartelsRankTest Bartels Rank Test
GCD, LCM Greatest Common Divisor and Least Common Multiple
PlotHorizBar Plot Horizontal Bars
DegToRad Convert Degrees to Radians and vice versa
BinomDiffCI Confidence Interval for a Difference of Binomials
CombPairs Get All Pairs out of one or two Sets of Elements
Desc Describe Data
FindCorr Determine highly correlated variables
ChooseColorDlg Display Color Dialog to Choose a Color
DrawAnnulusSector Draw a Sector of an Annulus
Mar Set Plot Margins
DurbinWatsonTest Durbin-Watson Test
LinScale Perform a linear scaling of x
StrPad Pad a String With Justification
ImportDlg Get Path of a Data File to Be Opened
Ndec Count Decimal Places of a Number
PlotTernary Ternary or Triangular Plots.
PlotMarDens Scatterplot with Marginal Densities
CronbachAlpha Cronbach's Coefficient Alpha
Desc.flags Describe a Set of Dichotomous Variables
Date Functions Basic Date Functions
PlotMiss Plot Missing Data
Rename Change Names of a Named Object
Dummy Generate Dummy Codes for a Factor
PlotBag PlotBag, a bivariate boxplot
CoefVar Coefficient of Variation
StuartMaxwellTest Stuart-Maxwell Marginal Homogeneity Test
HotellingsT2Test Hotelling's T2 Test
MixColor Compute the convex combination of two colors
LogSt Started Logarithmic Transformation and Its Inverse
PtInPoly Point in Polygon
ErrBars Add Error Bars to an Existing Plot
IsDate Check if an Object is of Type Date
GetNewWrd Create a new Word Instance
Herfindahl Concentration Measures
Desc.table Describe a n-dimensional Contingency Table
PlotMonth Plot Monthly or Seasonal Effects Of a Univariate Time Series
HexToRgb Convert a Hexstring Color to a Matrix With Three Red/Green/Blue Rows
DrawBand Draw Confidence Band
JonckheereTerpstraTest Exact Version of Jonckheere-Terpstra Test
ColToGrey Convert Colors to Grey/Grayscale
MeanDiffCI Confidence Interval For Difference of Means
HuberM Safe (generalized) Huber M-Estimator of Location
Rotate Rotate a Geometric Structure
HmsToSec Convert h:m:s To/From Seconds
JarqueBeraTest (Robust) Jarque Bera Test
Label Label Attribute of an Object
Conf Confusion Matrix And Associated Statistics
StrTrunc Truncate Strings and Add Ellipses If a String is Truncated.
BinTree Binary Tree
MeanSE Standard error of mean
MeanCI Confidence Interval for the Mean
PearsonTest Pearson chi-square test for normality
MultinomCI Confidence Intervals for Multinomial Proportions
LOCF Last Observation Carried Forward
FisherZ Fisher r to z and z to r and confidence intervals
Some numeric checks Check a Vector For Being Numeric, Zero Or a Whole Number
StrChop Split a String in a Number of Pieces With Fixed Length
WrdText Insert Normal Text to Word
SaveAsDlg Save R Objects By Choosing a File Interactively
day.name Build-in Constants Extension
Extremes Kth Smallest/Largest Values
FixToTab Text to Table
KendallTauB Kendall tau-b
%like% Like operator
PageTest Exact Page Test for Ordered Alternatives
GoodmanKruskalTauA Goodman Kruskal's Tau a
Keywords List valid Keywords for R man pages
Hmean Harmonic mean
CochranQTest Cochran's Q test
LOF Local Outlier Factor
Outlier Outlier
ScheffeTest Scheffe Test for Pairwise and Otherwise Comparisons
Factorize Prime Factorization of Integers
IsDichotomous Test If a Variable Contains Only Two Unique Values
PercTable Percentage Table
Midx Find the Midpoints of a Numeric Vector
Logit Generalized Logit and Inverse Logit function
GiniSimpson Compute Gini-Simpson Coefficient
UncertCoef Uncertainty Coefficient
GetNewXL Create a new Excel Instance
MedianCI Confidence Interval for the Median
HexToCol Identify closest match to a color given by a hexadecimal string
HodgesLehmann Hodges-Lehmann Estimator of Location
ImportFileDlg Import File In Foreign Format
LsFct List Functions of a Package
Permn Number and Samples for Permutations or Combinations of a Set
PlotCandlestick Plot Candlestick Chart
StrCountW Count Words in a String
PolarGrid Plot a Grid in Polar Coordinates
RoundM Round to Multiple
ZTest Z Test for Known Population Standard Deviation
PlotBubble Draw a Bubble Plot
SortMixed Order or Sort Strings With Embedded Numbers So That The Numbers Are In The Correct Order
OddsRatio Odds Ratio Estimation and Confidence Intervals
StrRev Reverse a String
PartitionBy PartitionBy Evaluates a Function Groupwise
SetRowNames Set the Row Names and Column Names in an Object
PlotArea Create an Area Plot
StrIsNumeric Does a String Contain Only Numeric Data
axTicks.POSIXct Compute Axis Tickmark Locations (For POSIXct Axis)
InDots Is a Specific Argument in the Dots-Arguments?
HoeffD Matrix of Hoeffding's D Statistics
Freq Frequency Table
StrCap Capitalize the First Letter of a String
StrVal Extract All Numeric Values From a String
Lambda Goodman Kruskal Lambda
LillieTest Lilliefors (Kolmogorov-Smirnov) test for normality
split.formula Formula Interface for Split
ShapiroFranciaTest Shapiro-Francia test for normality
Sort Sort a Vector, a Matrix, a Table or a Data.frame
MoveAvg Moving Average
IsOdd Checks If An Integer Is Even Or Odd
FindColor Get Color on a Defined Color Range
wdConst Word VBA constants
Untable Recover Original Data From Contingency Table
StrAbbr String Abbreviation
MeanAD Mean Absolute Deviation From a Center Point
PlotPolar Plot Values on a Circular Grid
WrdInsertBookmark Insert a Bookmark, Goto Bookmark and Update the Text of a Bookmark
LeveneTest Levene's Test for Homogeneity of Variance
KendallW Kendall's Coefficient of Concordance W
StuartTauC Stuart $\tau_{c}$
Primes Find all Primes Less Than n
SmoothSpline Formula Interface For smooth.spline
PlotFdist Frequency Distribution Plot
PasswordDlg Password Dialog
SomersDelta Somers' Delta
PlotTreemap Create a Treemap
ParseSASDatalines Parse a SAS Dataline Command
MosesTest Moses Test of Extreme Reactions
NPV One Period Returns, Net Present Value and Internal Rate of Return
Measures of Shape Skewness and Kurtosis
XLGetRange Import Data Directly From Excel
PlotECDF Empirical Cumulative Distribution Function
%c% Concatenates two strings without any separator.
PlotLinesA Plot Lines
DunnettTest Dunnett's Test for Comparing Several Treatments With a Control
PlotFun Plot a Function
WrdTable Produces a Table in Word
Strata Stratified sampling
StrTrim Remove Leading/Trailing Whitespace From A String
PlotMultiDens Plot Multiple Density Curves
pRevGumbel "Reverse" Gumbel Distribution Functions
TukeyBiweight Calculate Tukey's Biweight Robust Mean
TheilU Theil's U index of inequality
power.chisq.test Power Calculations for ChiSquared Tests
RunsTest Runs Test for Randomness
VecRot Vector Rotation
PoissonCI Poisson Confidence Interval
Rev Reverse Elements of a Vector or the Rows/Columns of Matrices and Tables
PlotDesc Display descriptive plots
PlotViolin Plot Violins Instead of Boxplots
PlotRCol Information plots
KappaM Kappa for m raters
Recycle Recyle a List of Elements
PlotMosaic Mosaic Plots
d.whisky Classification of Scotch Single Malts
SignTest Sign Test
RndPairs Create Pairs of Correlated Random Numbers
PlotDot Cleveland's Dot Plots
TextContrastColor Choose Textcolor Depending on Background Color
UnitConv Unit Conversion
IsValidWrd Check Word Pointer
SelectVarDlg Select Elements of a Set by Click
WoolfTest Woolf Test
lines.lm Add a Linear Regression Line
PlotFaces Chernoff Faces
Vigenere Vigenere Cypher
SpreadOut Spread Out a Vector of Numbers To a Minimum Interval
RobScale Robust Scaling With Median and Mad
WrdR Insert a R Command and It's Output in a Word Document
SiegelTukeyTest Siegel-Tukey Test For Equality In Variability
d.periodic Periodic Table of Elements
StrDist Compute Distances Between Strings
d.pizza Data pizza
TOne Create Table One Describing Baseline Characteristics
XLView Use Excel as Viewer for a Data.Frame
ZeroIfNA Replace NAs by 0
XLDateToPOSIXct Convert Excel Dates to POSIXct
StrAlign Align Strings To a Specified Character
Recode Recode a Factor
ToLong, ToWide Reshape a Vector From Long to Wide Shape Or Vice Versa
PostHocTest Post-Hoc Tests
d.countries ISO 3166-1 Country Codes
Winsorize Winsorize
StrLeft, StrRight Returns the Left Part Or the Right Part Of a String
YuenTTest Yuen t-Test For Trimmed Means
%nin% Find Matching (or Non-Matching) Elements
WrdCaption Insert Caption to Word
DescWrd Use Word as Reporting Tool for Describing Data
VarCI Confidence Interval for the Variance
WrdSetFont Set the Font in Word
median.factor Median for Ordered Factors
Xplore Interactive Graphical Data Explorer
identify.formula Identify Points In a Plot Using a Formula.
as.matrix.xtabs Convert xtabs To matrix
Gini Gini Coefficient
WrdPlot Insert Active Plot to Word
PlotCirc Plot Circular Plot
SysInfo System Information And DescTools Options
d.diamonds Data diamonds
Desc.logical Describe a dichotomous variable
lines.loess Add a Loess or a Spline Smoother
StrPos Find Position of First Occurrence Of a String
CutQ Create a Factor Variable Using the Quantiles of a Continuous Variable
AUC Area Under the Curve
ColToHex Convert a Color into Hex String
DivCoef Rao's diversity coefficient also called quadratic entropy
KrippAlpha Krippendorff's Alpha Reliability Coefficient
PartCor Find the Correlations for a Set x of Variables With Set y Removed
Ray Compact Information About the Columns of a Data Frame
SpearmanRho Spearman Rank Correlation
CochranArmitageTest Cochran-Armitage test for trend
TextToTable Converts String To a Table
HighLow Return the Lowest and the Highest Values and Their Frequencies
CohenD Cohen's Effect Size
DrawBezier Draw a Bezier Curve
FctArgs Retrieve a Functions' Arguments
GoodmanKruskalGamma Goodman Kruskal's Gamma
GTest G-Test for Count Data
DescTools Palettes Some Custom Palettes
PlotQQ QQ-Plot for Any Distribution
PlotWeb Plot a Web of Connected Points
PpPlot Add Slides, Insert Texts and Plots to PowerPoint
Str Compactly Display the Structure of an Arbitrary R Object
Trim Trim a Vector
Zodiac Calculate the Zodiac of a Date
WrdInsTab Insert a Table in a Word Document
DunnTest Dunn's Test of Multiple Comparisons
Lc Lorenz Curve
PairApply Pairwise Calculations
RobRange Robust Range
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Details

Type Package
Date 2015-10-24
LinkingTo Rcpp, BH
License GPL (>= 2)
LazyLoad yes
LazyData yes
ByteCompile yes
NeedsCompilation yes
Additional_repositories http://www.stats.ox.ac.uk/pub/RWin/
Packaged 2015-10-11 19:09:01 UTC; Andri
Repository CRAN
Date/Publication 2015-10-12 00:26:18
depends base (>= 3.1.0) , manipulate , R (>= 3.1.0) , stats
linkingto BH
imports boot , foreign , graphics , grDevices , methods , mvtnorm , Rcpp (>= 0.11.5) , utils
suggests RDCOMClient , tcltk
Contributors Yulia Gel, David Mitchell, Stephane Champely, Leanne Chhay, Markus Huerzeler, Daniel Malter, Yongyi Min, Markus Naepflin, Michael Smithson, Yves Tille, Stefan Wellek, Detlew Labes, Friederich Leisch, George Marsaglia, John Marsaglia, Nanina Anderegg, Clint Cummins, Dong Li, Hong Ooi, Pete Hurd, Matthias Kohl, Bill Venables, Rob Hyndman, David Meyer, Dirk Eddelbuettel, Kevin Ushey, Brian Ripley, Ben Bolker, Jim Lemon, John Verzani, Tony Plate, Michael Friendly, Richard Heiberger, Torsten Hothorn, Achim Zeileis, Klaus Nordhausen, Terry Therneau, Martin Maechler, Nick Parsons, Venkatraman Seshan, Tal Galili, Sandrine Pavoine, Gregory Warnes, Max Kuhn, Jeremy VanDerWal, John Fox, Michael Dewey, Greg Snow, Charles Dupont, Peter Wolf, Werner Stahel, Arni Magnusson, Tyler Rinker, Michael Hoehle, Gabor Grothendieck, Derek Ogle, Giovanni Millo, Andri Includes R source code, or previously published by, Tomas Aragon, Antti Arppe, Adrian Baddeley, Frederico Caeiro, Daniel Chessel, Harold Doran, Stephane Dray, Jeff Enos, Claus Ekstrom, Martin Elff, Matthias Gamer, Joseph Gastwirth, Juergen Gross, Frank Harrell Jr, Christian Hoffmann, Wallace Hui, Pablo Villacorta Iglesias, Mikko Korpela, Alina Matei, Weiwen Miao, Daniel Navarro, Roland Rapold, William Revelle, Caroline Rodriguez, Mark Stevenson, Adrian Trapletti, Rand Wilcox, Daniel Wollschlaeger, Thomas Yee, Richard Farebrother

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