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DivE (version 1.0)

Diversity Estimator

Description

R-package DivE contains functions for the DivE estimator (Laydon, D. et al., Quantification of HTLV-1 clonality and TCR diversity, PLOS Comput. Biol. 2014). The DivE estimator is a heuristic approach to estimate the number of classes or the number of species (species richness) in a population.

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Version

Install

install.packages('DivE')

Monthly Downloads

166

Version

1.0

License

GPL (>= 2)

Maintainer

Daniel Laydon

Last Published

April 14th, 2014

Functions in DivE (1.0)

ParamRanges

List of 58 sets of upper and lower bounds for models evaluated by DivE
divsubsamples

divsubsamples
ModelSet

List of 58 candidate models to fit to data
DivE-package

Diversity Estimator
Bact1

Count of Medically Important Bacteria Species in a Sample
DiveMaster

DiveMaster
DivE-internal

Internal functions
divsamplenum

divsamplenum
comb.dm

comb.dm
fitsinglemod

fitsinglemod
scoresinglemod

scoresinglemod
Curvature

Curvature
popdiversity

popdiversity
ParamSeeds

List of 58 matrices of model seeding parameters.