DivE (version 1.0)

comb.dm: comb.dm

Description

Implements the DivE diversity estimator. Combines multiple objects of class DiversityMaster.

Usage

comb.dm(dmlist)

Arguments

dmlist

list of objects of class DiversityMaster.

Value

An object of class DiversityMaster, i.e. a list of objects

model.score

a matrix of aggregated model scores

fmm

a list of fitsingMod objects corresponding to the list of fitted models

ssm

a matrix of scores of the fit of the models corresponding to the list of fitted models

estimate

the estimate of species richness (number of species/classes or diversity) at population size tot.pop. This is the geometric average of the models corresponding to the top-five model scores. This is recalculated based on the combined list of models

lower_estimate

as per estimate value, but the lowest prediction amongst the models having the top-five scores. This is recalculated based on the combined list of models

upper_estimate

as per estimate value, but the highest prediction amongst the models having the top-five scores. This is recalculated based on the combined list of models

models

list of original input models

m

number of topscoring models used for diversity estimate. This is set as the smallest m value of each of the DiversityMaster objects in the list

Details

comb.dm combines multiple objects of class DiversityMaster. Function used if DivE estimation has been split into multiple, separate calls to DiveMaster.

References

Laydon, D., Melamed, A., Sim, A., Gillet, N. A., Sim, K., Darko, S., Kroll, S., Douek, D. C., Price, D., Bangham, C. R. M., Asquith, B., Quantification of HTLV-1 clonality and TCR diversity, PLOS Comput. Biol. 2014

See Also

DiveMaster

Examples

# See DiveMaster documentation for examples.