DysPIA (version 1.3)

Dysregulated Pathway Identification Analysis

Description

It is used to identify dysregulated pathways based on a pre-ranked gene pair list. A fast algorithm is used to make the computation really fast. The data in package 'DysPIAData' is needed.

Copy Link

Version

Install

install.packages('DysPIA')

Monthly Downloads

275

Version

1.3

License

GPL (>= 2)

Maintainer

Limei Wang

Last Published

July 10th, 2020

Functions in DysPIA (1.3)

setUpBPPARAM

DysGPS_p53

Example vector of DysGPS in p53 data.

calcDyspiaStatCumulative

Calculates DysPIA statistic values for all the prefixes of a gene pair set

calcDyspiaStatCumulativeBatch

Calculates DysPIA statistic values for the gene pair sets

calEdgeCorScore_ESEA

calEdgeCorScore_ESE

calcDyspiaStat

calcDyspiaStat: Calculates DysPIA statistics

DyspiaRes_p53

Example list of DysPIA result in p53 data.

DysPIA

DysPIA: Dysregulated Pathway Identification Analysis

DyspiaSig

class.labels_p53

Example vector of category labels.

gene_expression_p53

Example matrix of gene expression value.

DyspiaSimpleImpl

DysGPS

DysGPS: Calculates Dysregulated gene pair score (DysGPS) for each gene pair

sample_background

Example list of gene pair background.