DysPIA (version 1.3)

calcDyspiaStatCumulativeBatch: Calculates DysPIA statistic values for the gene pair sets

Description

Calculates DysPIA statistic values for the gene pair sets

Usage

calcDyspiaStatCumulativeBatch(
  stats,
  DyspiaParam,
  pathwayScores,
  pathwaysSizes,
  iterations,
  seed
)

Arguments

stats

Named numeric vector with gene pair-level statistics sorted in decreasing order (order is not checked).

DyspiaParam

DysPIA weight parameter (0 is unweighted, suggested value is 1).

pathwayScores

Vector with enrichment scores for the pathways in the database.

pathwaysSizes

Vector of pathway sizes.

iterations

Number of iterations.

seed

Seed vector

Value

List of DysPIA statistics for gene pair sets.