EBImage v4.14.2
by Andrzej Ole
Image processing and analysis toolbox for R
EBImage provides general purpose functionality for image processing and analysis. In the context of (high-throughput) microscopy-based cellular assays, EBImage offers tools to segment cells and extract quantitative cellular descriptors. This allows the automation of such tasks using the R programming language and facilitates the use of other tools in the R environment for signal processing, statistical modeling, machine learning and visualization with image data.
Functions in EBImage
Name | Description | |
paintObjects | Mark objects in images | |
fillHull | Fill holes in objects | |
normalize | Intensity values linear scaling | |
resize | Spatial linear transformations | |
tile | Tiling/untiling images | |
distmap | Distance map transform | |
channel | Color and image color mode conversions | |
bwlabel | Binary segmentation | |
colormap | Map a Greyscale Image to Color | |
medianFilter | 2D constant time median filtering | |
combine | Combining images | |
thresh | Adaptive thresholding | |
watershed | Watershed transformation and watershed based object detection | |
localCurvature | Local Curvature | |
display | Image Display | |
transpose | Image Transposition | |
equalize | Histogram Equalization | |
Image | Image class | |
gblur | Low-pass Gaussian filter | |
EBImage-deprecated | Deprecated functions in package EBImage | |
drawCircle | Draw a circle on an image. | |
colorLabels | Color Code Labels | |
rmObjects | Object removal and re-indexation | |
otsu | Calculate Otsu's threshold | |
EBImage-defunct | Defunct functions in package EBImage | |
io | Image I/O | |
morphology | Perform morphological operations on images | |
ocontour | Oriented contours | |
computeFeatures | Compute object features | |
propagate | Voronoi-based segmentation on image manifolds | |
floodFill | Region filling | |
EBImage | Package overview | |
filter2 | 2D Convolution Filter | |
stackObjects | Places detected objects into an image stack | |
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Details
Encoding | UTF-8 |
License | LGPL |
LazyLoad | true |
biocViews | Visualization |
VignetteBuilder | knitr |
URL | https://github.com/aoles/EBImage |
BugReports | https://github.com/aoles/EBImage/issues |
imports | abind , BiocGenerics (>= 0.7.1) , fftwtools (>= 0.9-7) , graphics , grDevices , jpeg , locfit , methods , png , stats , tiff , utils |
suggests | BiocStyle , digest , knitr , rmarkdown |
Contributors | Andrzej Oles, Gregoire Pau, Oleg Sklyar, Mike Smith, Wolfgang Huber |
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