EBImage v4.14.2
by Andrzej Ole
Image processing and analysis toolbox for R
EBImage provides general purpose functionality for image processing and analysis. In the context of (high-throughput) microscopy-based cellular assays, EBImage offers tools to segment cells and extract quantitative cellular descriptors. This allows the automation of such tasks using the R programming language and facilitates the use of other tools in the R environment for signal processing, statistical modeling, machine learning and visualization with image data.
Functions in EBImage
| Name | Description | |
| paintObjects | Mark objects in images | |
| fillHull | Fill holes in objects | |
| normalize | Intensity values linear scaling | |
| resize | Spatial linear transformations | |
| tile | Tiling/untiling images | |
| distmap | Distance map transform | |
| channel | Color and image color mode conversions | |
| bwlabel | Binary segmentation | |
| colormap | Map a Greyscale Image to Color | |
| medianFilter | 2D constant time median filtering | |
| combine | Combining images | |
| thresh | Adaptive thresholding | |
| watershed | Watershed transformation and watershed based object detection | |
| localCurvature | Local Curvature | |
| display | Image Display | |
| transpose | Image Transposition | |
| equalize | Histogram Equalization | |
| Image | Image class | |
| gblur | Low-pass Gaussian filter | |
| EBImage-deprecated | Deprecated functions in package ‘EBImage’ | |
| drawCircle | Draw a circle on an image. | |
| colorLabels | Color Code Labels | |
| rmObjects | Object removal and re-indexation | |
| otsu | Calculate Otsu's threshold | |
| EBImage-defunct | Defunct functions in package ‘EBImage’ | |
| io | Image I/O | |
| morphology | Perform morphological operations on images | |
| ocontour | Oriented contours | |
| computeFeatures | Compute object features | |
| propagate | Voronoi-based segmentation on image manifolds | |
| floodFill | Region filling | |
| EBImage | Package overview | |
| filter2 | 2D Convolution Filter | |
| stackObjects | Places detected objects into an image stack | |
| No Results! | ||
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Details
| Encoding | UTF-8 |
| License | LGPL |
| LazyLoad | true |
| biocViews | Visualization |
| VignetteBuilder | knitr |
| URL | https://github.com/aoles/EBImage |
| BugReports | https://github.com/aoles/EBImage/issues |
| imports | abind , BiocGenerics (>= 0.7.1) , fftwtools (>= 0.9-7) , graphics , grDevices , jpeg , locfit , methods , png , stats , tiff , utils |
| suggests | BiocStyle , digest , knitr , rmarkdown |
| Contributors | Andrzej Oles, Gregoire Pau, Oleg Sklyar, Mike Smith, Wolfgang Huber |
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[](http://www.rdocumentation.org/packages/EBImage)