EMA (version 1.4.3)

goReport: Text report from the 'hyperGTest' function

Description

Create a text report with the significant probesets for each significant GO category from the result of a call to 'hyperGTest'

Usage

goReport(hgOver, fileout = "report.txt", type = c("CC", "MF", "BP"),
pack.annot, pvalue = 0.05, categorySize=1)

Arguments

hgOver

result from a call to 'hyperGTest'

fileout

name of txt file, by default "report.txt"

type

type of GO categories, by default = c("CC", "MF", "BP")

pack.annot

the annotation package to use

pvalue

cutoff for significant pvalue, by default 0.05

categorySize

integer, minimum size for category, by default = 1

Value

• Txt report with the results of a call to 'hyperGTest'

Details

goReport needs packages GOstats and GO.db from Bioconductor.

See Also

hyperGTest, runHyperGO