Genes selection
FDR.BH
Correlation between Genes collection and Genes Array
Compute Dice distance on a data matrix
Distribution plots of genes expression level
EMA - Easy Microarray Analysis
barplot of genes expression level
Computing Multiple Wilcoxon Tests
Generalized version of intersect for n objects
Compute survival curves and test difference between the curves
Html report from the result of the 'hyperGTest' function
htmlheader
Test linear combinations of parameters of a linear model
Computes distances on a data matrix
Microarray color palette
Computing Multiple Student Tests
Kmeans and hierarchical clustering
eval.stability.clustering
Compares several clustering methods by means of its stability.
Annotation of probesets using biomaRt
Run KEGG pathway analysis based on hypergeometric test from a probeset list
Text report from the 'hyperGTest' function
Compute foldchange
Computing Differential Analysis for each gene
Filter expression data
Clustering plots for one or two ways representation
Multiple testing correction
GSA analysis
Text report from the result of the 'hyperGTest' function for KEGG
pathway analysis
marty data
marty class data for Basal vs HER2 cancer type
Variable representation for Principal Component Analysis
Sample quality computation in PCA
Function to perform a Multiple Factor Analysis.
Create all pairwise contrasts
Multiple testing correction using FWER
Sample representation for Principal Component Analysis
Run Gene Ontology analysis based on hypergeometric test from a probeset list
inverse
Test for nested ANOVA models
Barplot of component inertia percentage for PCA
Chisq test for ordinal values
Convert labels to colors
Partial Least Squares
Sample and variable representation on a same graph for PCA
Function to create a txt and pdf report with the main statistics
and graphics of the MFA.
Generalized version of setdiff for n objects
Perform an Principal Component Analysis
Compute Jaccard distance on a data matrix
Normalisation of Affymetrix expression arrays
Agglomerative hierarchical clustering
Plot the expression profiles of the probes corresponding to given probesets
SAM analysis with siggenes package