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EMA (version 1.4.3)

htmlresult: Html report from the result of the 'hyperGTest' function

Description

Create a html report from the result of a call to 'hyperGTest'

Usage

htmlresult(hgOver, filename, app = FALSE, categorySize = 1, pvalue=0.05)

Arguments

hgOver
result from a call to 'hyperGTest'
filename
file name with path for html result
app
if TRUE, overwrite the pre-existing html report file, by default FALSE
categorySize
an integer, minimum size for category, by default =1
pvalue
the pvalue threshold for significance, default =0.05

Value

  • An html report with the result from a call to 'hyperGTest'

    Id, pvalue, Odd Ratio, Expected Count, Count, Size and Term are returned

Details

htmlresult needs packages GOstats and GO.db from Bioconductor.

See Also

hyperGTest,runHyperGO