Ancestry.list

<p><code>Ancestry.list</code> is a list of numeric matrices corresponding to three populations
of the American maize NAM experiment. Each matrix has 0/1 entries representing
the ancestry of alleles (0: homozygous for B73 alleles and 1: homozygous
for alternative parent alleles).
Each matrix includes 191 to 196 recombinant inbred lines characterized at 1,106 markers.</p>

datasets

Provides functions to test for gene x gene interactions in a
bi-parental population of inbred lines. The data are fitted with the
mixed linear model described in Rio et al. (2022) <doi:10.1101/2022.12.18.520958>,
that accounts for gene x gene interactions
at both the fixed effect and variance levels. The package also
provides graphical tools to display the gene x gene interaction trend at
the mean level and the variance component analysis.

Simon Rio

EpiTest

Test for Gene x Gene Interactions in Bi-Parental Populations

Tristan Mary-Huard

Ancestry.list function

Format

Allele ancestries for the American maize NAM dataset — Ancestry.list

Allele ancestries for the American maize NAM dataset

Ancestry.list: Allele ancestries for the American maize NAM dataset

Description

Usage

Arguments

Format