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EpiTest (version 1.0.0)

Test for Gene x Gene Interactions in Bi-Parental Populations

Description

Provides functions to test for gene x gene interactions in a bi-parental population of inbred lines. The data are fitted with the mixed linear model described in Rio et al. (2022) , that accounts for gene x gene interactions at both the fixed effect and variance levels. The package also provides graphical tools to display the gene x gene interaction trend at the mean level and the variance component analysis.

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Version

Install

install.packages('EpiTest')

Monthly Downloads

180

Version

1.0.0

License

GPL (>= 3)

Maintainer

Simon Rio

Last Published

December 20th, 2022

Functions in EpiTest (1.0.0)

Pheno.list

Phenotypes for the American maize NAM dataset
EpiTest.fit

Inference and Test
VarList.comp

Compute covariance matrices
EpiTest.plot

Display variance component or directional epistasis graphs
EpiTest.plot.mean

Display directional epistasis plot
pchisqmix

Chi-Squared Mixtures Distribution Function
EpiTest.plot.var

Display variance component graphs
Ancestry.list

Allele ancestries for the American maize NAM dataset
Parents

Phenotypes for parental lines of the American maize NAM dataset
%>%

Pipe operator