EpiTest.plot.mean

Display directional epistasis plot

Provides functions to test for gene x gene interactions in a
bi-parental population of inbred lines. The data are fitted with the
mixed linear model described in Rio et al. (2022) <doi:10.1101/2022.12.18.520958>,
that accounts for gene x gene interactions
at both the fixed effect and variance levels. The package also
provides graphical tools to display the gene x gene interaction trend at
the mean level and the variance component analysis.

Simon Rio

EpiTest

Test for Gene x Gene Interactions in Bi-Parental Populations

Tristan Mary-Huard

EpiTest.plot.mean function

<dl><dt>ETest</dt>
<dd>a list as obtained from the EpiTest.fit function</dd>
<dt>Title</dt>
<dd>(optional) a character string to be used as a title for the graph</dd>
<dt>Family_names</dt>
<dd>(optional) a character vector with family names</dd>
<dt>Alpha</dt>
<dd>type I error for the test</dd></dl>

Arguments

Display directional epistasis plot — EpiTest.plot.mean

<dl>

<dt>ETest</dt>
<dd>a list as obtained from the EpiTest.fit function</dd>


<dt>Title</dt>
<dd>(optional) a character string to be used as a title for the graph</dd>


<dt>Family_names</dt>
<dd>(optional) a character vector with family names</dd>


<dt>Alpha</dt>
<dd>type I error for the test</dd>

</dl>

EpiTest.plot.mean: Display directional epistasis plot

Description

Usage

Value

Arguments