VarList.comp

This function computes the covariance matrices associated with
the variance components of the EpiTest model: the segregation variance,
the (segregation <code>x</code> segregation) variance and the error variance

Provides functions to test for gene x gene interactions in a
bi-parental population of inbred lines. The data are fitted with the
mixed linear model described in Rio et al. (2022) <doi:10.1101/2022.12.18.520958>,
that accounts for gene x gene interactions
at both the fixed effect and variance levels. The package also
provides graphical tools to display the gene x gene interaction trend at
the mean level and the variance component analysis.

Simon Rio

EpiTest

Test for Gene x Gene Interactions in Bi-Parental Populations

Tristan Mary-Huard

VarList.comp function

<dl><dt>Ancestry</dt>
<dd>a matrix with 0/1 entries representing the allele ancestries
of a bi-parental population at a set of markers (0: homozygous for parent A
alleles and 1: homozygous for parent B alleles)</dd></dl>

Arguments

Compute covariance matrices — VarList.comp

<dl>

<dt>Ancestry</dt>
<dd>a matrix with 0/1 entries representing the allele ancestries
of a bi-parental population at a set of markers (0: homozygous for parent A
alleles and 1: homozygous for parent B alleles)</dd>

</dl>

VarList.comp: Compute covariance matrices

Description

Usage

Value

Arguments

Examples