FISHalyseR (version 1.6.2)

analyseParticles: Analyse

Description

Cleans a given binary image according to area criteria specified by the user.

Usage

analyseParticles(Image,MaxSize,MinSize, isMask)

Arguments

Image

Binary image

MaxSize

Maximum area allowed for objects

MinSize

Minimum area allowed for objects

isMask

In case isMask=1, the function assumes that the binary images contains nuclei. Nuclei with an area smaller than MaxSize and greater than MinSize will be removed. If isMask=0, the function assumes that the binary images contains probes and subsequently probes with an area smaller than MinSize or larger than MaxSize are removed

Value

Returns a labeled image

Examples

f = system.file( "extdata", "SampleFISHgray.jpg", package="FISHalyseR")
img = readImage(f)

anaImg <- analyseParticles(img, 20000, 1000,0)
## anaImg contains now the cleaned-up image