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FISHalyseR (version 1.6.2)

FISHalyseR a package for automated FISH quantification

Description

FISHalyseR provides functionality to process and analyse digital cell culture images, in particular to quantify FISH probes within nuclei. Furthermore, it extract the spatial location of each nucleus as well as each probe enabling spatial co-localisation analysis.

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Version

Version

1.6.2

License

Artistic-2.0

Maintainer

Karesh Arunakirinathan

Last Published

February 15th, 2017

Functions in FISHalyseR (1.6.2)

processFISH

FISHalyseR - Automated fluorescence in situ hybridisation quantification in R
computeIlluminationCorrection

Multidimensional Illumination Correction
analyseParticles

Analyse
calculateThreshold

Compute threshold using Otsu's method
calculateMaxEntropy

Max Entropy thresholding