FISHalyseR (version 1.6.2)

computeIlluminationCorrection: Multidimensional Illumination Correction

Description

Function to compute the multidimensional illumination correction (MDIC) using a stack of images

Usage

computeIlluminationCorrection(Images,pattern='*',AmountOfFiles=6)

Arguments

Images

Directory containing the images

pattern

Filenames have to match the pattern specified here

AmountOfFiles

Limit the amount of files used to compute the illumination gradient

Value

computeIlluminationCorrection

return the image containing the illumination background

Examples

illuCorrection = dirname(system.file( "extdata", "SampleFISHillu.jpg", package="FISHalyseR"))