FlowRepositoryR (version 1.4.0)

FlowRepository R Interface

Description

This package provides an interface to search and download data and annotations from FlowRepository (flowrepository.org). It uses the FlowRepository programming interface to communicate with a FlowRepository server.

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Version

1.4.0

License

Artistic-2.0

Maintainer

Josef Spidlen

Last Published

February 15th, 2017

Functions in FlowRepositoryR (1.4.0)

flowRep.submitGeneStatus

Submit information about an IMPC gene analysis results to FlowRepository.

flowRep.submitImpcResults

Submit IMPC data analysis results to FlowRepository.

flowRepData-class

'flowRepData': a class for storing metadata about a FlowRepository dataset

ilarCodeDescription

Get the name of a lab from it's ILAR code

setFlowRepositoryCredentials

Set credentials (email and password) to login to FlowRepository.

fcsProxy-class

'fcsProxy': a class representing a proxy to an FCS file in FlowRepository

download

Download dataset files

attachmentProxy-class

'attachmentProxy': a class representing a proxy to an attachment file in FlowRepository

impcCodeDescription

Get a human readable description of an IMPC code.

Retrieve the identifier of flowRepData objects

getFlowRepositoryURL

Get FlowRepository URL addresss.

flowRep.search

Search FlowRepository for datasets matching the query and retrieve a vector of identifiers of matching datasets.

fileProxy-class

'fileProxy': a class representing a proxy to a file in FlowRepository

listKnownIlarCodes

List all known ILAR codes.

is.downloaded

Check if a dataset or a file proxy is downloaded

flowRepOrganization-class

'flowRepOrganization': a class for storing details about an organization associated with a FlowRepository dataset

setFlowRepositoryURL

Set FlowRepository URL addresss.

impcResultsCopy

Retrieve a copy of IMPC results associated with a flowRepData object

FlowRepositoryR-package

Programming interface to access FlowRepository.org

flowRep.ls

List identifiers of datasets available in FlowRepository

forgetFlowRepositoryCredentials

Forgets credentials (email and password) to login to FlowRepository.

flowRep.get

Retrieve information about a specified FlowRepository dataset.