Usage
flowRep.ls( include.private = FALSE, impc.only = FALSE, impc.unanalyzed.only = FALSE, impc.centre = NULL, impc.date.from = NULL, impc.date.to = NULL, impc.specimen.geneKO.mgiId=NULL, impc.specimen.geneKO.geneSymbol=NULL, impc.specimen.baseline=NULL, impc.specimen.minCount=NULL )
Arguments
include.private
Whether to include private experiments
in the list. This only works if credentials to access
FlowRepository have been provided. By default, only
public experiments will be listed.
impc.only
Whether to return only datasets that are
related to IMPC experiments and IMPC specimen.
impc.unanalyzed.only
Whether to return only datasets that are
related to an IMPC experiment and that do not have any automated
analysis results associated with.
impc.centre
Whether to return only datasets that are
related to an IMPC experiment performed by a specified IMPC centre.
If this is not NULL then it shall be an ILAR code of a known IMPC
centre; see also listKnownIlarCodes.
The impc.only will be set to TRUE automatically if impc.centre is
provided. impc.date.from
Whether to return only datasets that are
related to an IMPC experiment performed on or after the specified date.
If this is not NULL then it shall be a value of the Date class,
e.g., as.Date("2015-11-24", "%Y-%m-%d").
The impc.date.to will be set to TRUE automatically if impc.centre is
provided.
impc.date.to
Whether to return only datasets that are
related to an IMPC experiment performed on or before the specified date.
If this is not NULL then it shall be a value of the Date class,
e.g., as.Date("2015-11-24", "%Y-%m-%d").
The impc.date.to will be set to TRUE automatically if impc.centre is
provided.
impc.specimen.geneKO.mgiId
Whether to return only datasets
related to an IMPC experiment that involves a specimen with a specified
gene knockout (KO). In this argument, the KO gene is referenced by
its MGI gene id.
The impc.date.to will be set to TRUE automatically if impc.centre is
provided.
impc.specimen.geneKO.geneSymbol
Whether to return only datasets
related to an IMPC experiment that involves a specimen with a specified
gene knockout (KO). In this argument, the KO gene is referenced by
its gene symbol.
The impc.date.to will be set to TRUE automatically if impc.centre is
provided.
impc.specimen.baseline
Whether to return only datasets
related to an IMPC experiment that involves a specimen with a specified
boolean baseline attribute, the value of which shall match the value
of this argument. That means, if impc.specimen.baseline is set
to TRUE then only IMPC specimen marked as baseline will be considered.
If impc.specimen.baseline is set to FALSE then only IMPC specimen
that are not marked as baseline will be considered. If
impc.specimen.baseline is left as NULL then both baseline and not
baseline specimen will be considered.
The impc.date.to will be set to TRUE automatically if impc.centre is
provided.
impc.specimen.minCount
Whether to return only datasets
related to IMPC experiments that together involve at least the
specified minimum number of specimen.
The impc.date.to will be set to TRUE automatically if impc.centre is
provided.