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FlowSOM (version 1.0.0)

Using self-organizing maps for visualization and interpretation of cytometry data

Description

FlowSOM offers visualization options for cytometry data, by using Self-Organizing Map clustering and Minimal Spanning Trees

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Version

Version

1.0.0

License

GPL (>= 2)

Maintainer

Sofie Van Gassen

Last Published

February 15th, 2017

Functions in FlowSOM (1.0.0)

MetaClustering

MetaClustering
PlotPies

Plot comparison with other clustering
PlotStars

Plot star charts
BuildSOM

Build a self-organizing map
CountGroups

Compute differences between groups
PlotCenters

Plot cluster centers on a 2D plot
PlotClusters2D

Plot nodes on scatter plot
NewData

Map new data to a FlowSOM grid
FlowSOM

Run the FlowSOM algorithm
Purity

Purity of a clustering result
FlowSOMSubset

FlowSOM subset
ReadInput

Read fcs-files or flowframes
FMeasure

FMeasure of a clustering result
metaClustering_consensus

MetaClustering
PlotMarker

Plot marker values
PlotGroups

Plot differences between groups
AggregateFlowFrames

Aggregate multiple fcs files together
BuildMST

Build Minimal Spanning Tree
UpdateNodeSize

Update nodesize of FlowSOM object